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Head and neck cancer is the
sixth common malignancy and a major cause of
cancer morbidity and mortality worldwide and oral
cavity is one of the most commonly affected sites.
Worldwide over 350,000 to 400,000 new cases of
cancer are reported each year. Cancers
of Head and Neck comprises ~24.1 % of total cancers
seen at the Tata Memorial Centre, Mumbai, of these
~13.5 % are from the Oral cavity. In the post
genomic era, efforts to understand oral cancer are
aimed at obtaining genomic and proteomic profiles
which generate enormous data. Thus the challenge
is to analyze the data effectively and utilize the
information for diagnosis, prognosis and
treatment.
OrCGDB (http://www.tumor-gene.org/Oral/oral.html) oral cancer gene
database has
information for only 15 genes without a search
engine and interaction network. Our first
database with 242 genes was made in 2007 and
is available at (http://www.actrec.gov.in/oralcancer/GeneHome.htm). The
present database, version II, has been
updated to include 374 genes. It has been developed
as a user friendly site that would provide the
scientist, information and external links from one
place. |
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Click
here to get list of all 374 genes in the
database. For each gene, hyperlink
to its PubMed reference is provided. Clicking on gene name
gives detailed information on aliases, function,
chromosomal location, mutations and SNPs,
mRNA expression, Protein information, pathways
involved and interacting proteins, expression of
genes in different tissues, and clinical
correlates. |
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Keyword
search using Gene name or gene symbol,
Chromosomal location, CGH (in %), and
Molecular
weight. Advanced search option for multiple
searches from the above parameters is also
available. |
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Interaction
Network shows the interaction between genes
for particular biological processes and molecular
functions. The connecting line between the two
genes gives the PubMed reference for their
interactions. Clicking on the gene name gives
detailed information.
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Oral Cancer Gene Database (Version II)
consists of 374 genes which has been published in :
Nikhil Sureshkumar Gadewal
, Surekha Mahesh Zingde., Database and
interaction network of
genes involved in oral cancer, Bioinformation, 6
(4) 169-170, 2011. (Full-text
Pdf)
For
suggestion and comments: Curator: Mr.
Nikhil S. Gadewal (ngadewal@actrec.gov.in)
Science
Editor: Dr. Surekha M. Zingde (szingde@actrec.gov.in)
**This database is best
viewed in Internet Explorer** |