Infectious Pathogen Detector (IPD)

Pre-requisites and Download of Infectious Pathogen Detector (IPD):

Pre-requisites:

System Requisites:
   - Pip3
   - Python3
   - Conda.


Python packages:
   - pysam
   - Tkinter (Required for GUI operations only)
   - Conda


Packages required for automated report generation:
   - Numpy
   - Matplotlib
   - Pandas
   - SciPy


Download:

Infectious Pathogen Detector (IPD) can be downloaded from Infectious Pathogen Detector . Upon download, extract the zip folder. Open terminal (Ctrl + Alt + T) and get into the unzipped folder. Once in the unzipped folder, run 'bash install.sh' (You need to have root permissions)

You may find the IPD user manual here.